Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs4747471 | chr10:23713911 | A/G | 3.05E-6 | 407 | 18.27 | 11.98 | 15.6 | KM Plot |
| LGG | rs4752508 | chr10:122954645 | C/T | 1.72E-7 | 407 | 15.35 | 13.12 | 109.43 | KM Plot |
| LGG | rs4755345 | chr11:45891508 | A/G | 2.06E-9 | 401 | 9.28 | 15.15 | 15.57 | KM Plot |
| LGG | rs4756028 | chr11:45835846 | G/A | 2.67E-9 | 405 | 3.77 | 15.15 | 15.6 | KM Plot |
| LGG | rs4759229 | chr12:56474480 | A/G | 4.16E-5 | 393 | 11.4 | 15.23 | 16.47 | KM Plot |
| LGG | rs4761154 | chr12:69705362 | A/G | 0.000169 | 407 | 17.87 | 15.47 | 14.77 | KM Plot |
| LGG | rs4761228 | chr12:69682327 | G/A | 0.000207 | 403 | 15.15 | 14.53 | 18.65 | KM Plot |
| LGG | rs4761231 | chr12:69711886 | T/A | 0.000221 | 404 | 14.95 | 14.9 | 17.53 | KM Plot |
| LGG | rs4761232 | chr12:69712003 | C/T | 0.000154 | 405 | 14.95 | 14.63 | 16.73 | KM Plot |
| LGG | rs4761233 | chr12:69722880 | T/C | 8.1E-5 | 400 | 14.95 | 14.77 | 18.65 | KM Plot |
| LGG | rs4764838 | chr12:102293739 | A/C | 5.83E-6 | 401 | 14.43 | 19.33 | 21.25 | KM Plot |
| LGG | rs4779913 | chr15:31965693 | C/T | 0.000122 | 404 | 15.93 | 14.87 | 11.8 | KM Plot |
| LGG | rs4809262 | chr20:61489101 | G/C | 3.8E-6 | 391 | 15.67 | 15.97 | 5.5 | KM Plot |
| LGG | rs4809425 | chr20:61481641 | C/A | 3.2E-6 | 395 | 15.7 | 15.67 | 5.5 | KM Plot |
| LGG | rs4809428 | chr20:61491090 | T/G | 2.5E-6 | 393 | 15.7 | 15.25 | 5.5 | KM Plot |